STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_1673Putative AMP-dependent synthetase and ligase. (544 aa)    
Predicted Functional Partners:
pfaA
Putative polyunsaturated fatty acid synthase.
 
 0.935
MVIS_1674
Putative membrane associated phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      0.832
hmgA-2
3-hydroxy-3-methylglutaryl-CoA reductase.
 
     0.819
MVIS_1671
Pyruvate phosphate dikinase.
 
     0.804
MVIS_1672
Putative uncharacterized protein.
     
 0.775
MVIS_2969
Putative peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.763
MVIS_1390
Fatty acyl-CoA reductase.
  
 
 0.761
pfaC
Putative polyunsaturated fatty acid synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.722
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
   0.675
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.667
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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