Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MVIS_1960Polysaccharide deacetylase. (322 aa)    
Predicted Functional Partners:
MVIS_1961
Glycosyl transferase, group 1.
 
     0.839
MVIS_1962
Glycosyl transferase, group 1.
 
     0.829
MVIS_1954
Membrane protein.
 
     0.812
MVIS_1953
Putative exported protein.
 
   
 0.798
MVIS_1949
Putative uncharacterized protein.
 
   
 0.777
MVIS_1951
Exosortase.
 
     0.765
MVIS_1939
Putative uncharacterized TPR repeat protein.
 
   
 0.762
MVIS_1950
Heparinase II/III-like protein.
 
   
 0.738
MVIS_1943
Lipopolysaccharide biosynthesis protein.
 
     0.715
MVIS_1959
Glycosyl transferase, group 1.
 
     0.668
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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