STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_1979Phage integrase. (324 aa)    
Predicted Functional Partners:
MVIS_1254
Capsid portal protein.
  
    0.749
MVIS_2002
Phage portal protein; Similar to Vibrio phage K139 orf15.
  
    0.749
MVIS_1256
Capsid scaffolding protein.
  
    0.741
MVIS_2004
Capsid scaffolding protein.
  
    0.741
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
 0.719
MVIS_1255
Terminase, ATPase subunit.
  
    0.707
MVIS_1257
Major capsid protein.
  
    0.673
MVIS_2005
Phage major capsid protein, P2 family,Phage major capsid protein, P2 family.
  
    0.673
MVIS_4023
Putative phage integrase; Belongs to the 'phage' integrase family.
  
     0.607
MVIS_1995
Phage replication protein.
 
    0.605
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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