STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_2029Putative capsular polysaccharide synthesis protein. (239 aa)    
Predicted Functional Partners:
MVIS_2028
Polysaccharide biosynthesis/export protein.
 
 
 0.965
MVIS_2026
Putative anti-sigma F factor antagonist.
 
   
 0.937
MVIS_2030
Response regulator.
 
   0.868
MVIS_1479
Polysaccharide biosynthesis protein.
 
  
 0.786
MVIS_2338
Putative uncharacterized protein.
 
    0.784
MVIS_2027
Putative lipoprotein.
       0.773
MVIS_3513
Lipopolysaccharide biosynthesis protein.
 
  
 0.761
MVIS_2336
Chain length regulator (capsular polysaccharide biosynthesis).
 
  
 0.749
MVIS_1455
O-antigen polymerase.
 
  
 0.746
MVIS_2334
Putative glycosyltransferase.
 
  
 0.731
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.