STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_2071HTH-type transcriptional regulator, AraC-family. (334 aa)    
Predicted Functional Partners:
MVIS_2070
MaoC-like dehydratase.
 
     0.787
MVIS_2069
Long-chain fatty-acid-CoA ligase.
 
     0.703
MVIS_2907
Beta-lactamase.
  
     0.646
MVIS_4358
Putative glutathione S-transferase.
  
     0.552
MVIS_2655
Putative uncharacterized protein.
  
     0.542
MVIS_2072
Short-chain dehydrogenase.
  
     0.507
MVIS_3961
Fatty acid desaturase.
  
     0.504
MVIS_2551
Putative exported protein.
  
     0.498
MVIS_2653
Putative uncharacterized protein.
  
     0.425
MVIS_3438
Putative uncharacterized protein.
  
     0.420
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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