STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_2198HTH-type transcriptional activator, TetR family. (193 aa)    
Predicted Functional Partners:
MVIS_2199
NADH-dependent flavin oxidoreductase.
  
  
 0.726
MVIS_0117
HTH-type regulatory protein, TetR-family.
  
   
 0.516
MVIS_0380
HTH-type transcriptional regulator, TetR family.
  
   
 0.480
nemA
N-ethylmaleimide reductase.
  
  
 0.454
MVIS_0837
NADH:flavin oxidoreductase.
  
  
 0.454
MVIS_0951
HTH-type transcriptional regulator, AraC family.
  
     0.405
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.404
MVIS_2200
HTH-type transcriptional activator, AraC family.
  
     0.402
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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