STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_2200HTH-type transcriptional activator, AraC family. (273 aa)    
Predicted Functional Partners:
MVIS_2731
HTH-type transcriptional regulator, AraC family.
  
   0.657
MVIS_2201
Putative exported protein.
 
     0.652
MVIS_2502
HTH-type transcriptional regulator, AraC family.
 
   0.628
MVIS_2205
Putative uncharacterized protein, DoxX family.
 
     0.540
MVIS_1432
HTH-type transcriptional regulator, AraC family.
  
   0.517
MVIS_2204
Putative uncharacterized protein.
 
     0.511
MVIS_1011
HTH-type transcriptional regulator, AraC family.
  
     0.505
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
   0.494
MVIS_2202
Putative exported protein.
 
     0.494
MVIS_3509
Putative uncharacterized protein.
  
     0.493
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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