STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katBCatalase; Belongs to the catalase family. (504 aa)    
Predicted Functional Partners:
MVIS_2981
Putative catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
  
  
 0.935
catA
Catalase; Belongs to the catalase family.
  
  
 
0.908
sodB
Superoxide dismutase [Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 0.884
sodC
Superoxide dismutase [Cu-Zn].
  
 0.756
MVIS_2070
MaoC-like dehydratase.
   
 0.721
MVIS_2363
Ankyrin-like protein.
 
 0.712
ahpF
Alkyl hydroperoxide reductase subunit F.
  
  
 0.667
prkA
Serine protein kinase, PrkA family.
   
  
 0.654
htpG
Chaperone protein HtpG (heat shock protein HtpG); Molecular chaperone. Has ATPase activity.
     
 0.639
hutA
TonB-dependent heme receptor.
   
  
 0.630
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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