STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_2371Putative exported protein. (458 aa)    
Predicted Functional Partners:
MVIS_2372
Putative exported protein.
 
  
 0.988
MVIS_1931
Putative exported protein.
 
  
 0.926
MVIS_1932
Putative transporter.
 
  
 0.841
MVIS_2175
Putative lipoprotein.
    
 
 0.720
lolB
Outer-membrane lipoprotein LolB precursor; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.716
amiB
N-acetylmuramoyl-L-alanine amidase.
    
   0.659
MVIS_1806
Putative lipoprotein.
 
    0.578
MVIS_2964
HTH-type transcriptional regulator, TetR family.
  
     0.445
lolE
Lipoprotein-releasing system transmembrane protein.
   
 
 0.437
lolC
Lipoprotein releasing system, transmembrane protein.
   
 
 0.437
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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