Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MVIS_2380Sigma-54 dependent transcriptional regulator. (539 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor (sigma-N); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.799
arcB-2
Response regulator, aerobic respiration control sensor protein ArcB.
   
 
 0.789
MVIS_0909
Putative membrane associated signaling protein, GGDEF family protein.
   
 
 0.538
gltB
Glutamate synthase, large subunit.
     
 0.505
norV
Anaerobic nitric oxide reductase flavorubredoxin.
 
   
 0.491
varS
Response regulator, histidine kinase VarS.
   
 
 0.463
MVIS_0295
Membrane associated histidine kinase.
 
 
 
 0.457
MVIS_1829
Sensor protein, histidine kinase.
   
 
 0.433
hmp
Flavohemoprotein; Belongs to the globin family.
     
 0.423
MVIS_1010
Putative membrane associated signaling protein, GGDEF family protein.
   
 
 0.418
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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