Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_2485Putative lipase. (202 aa)    
Predicted Functional Partners:
MVIS_2486
Membrane protein.
       0.488
MVIS_1729
Putative thioredoxin.
 
 
 
 0.459
MVIS_1072
ABC transporter, ATP-binding protein.
   
   0.445
MVIS_2484
Putative uncharacterized protein.
       0.444
MVIS_0891
Putative lipoprotein.
   
 
 0.424
MVIS_1106
Putative exported protein.
   
 
 0.424
MVIS_1415
Putative uncharacterized protein; No significant database matches.
   
 
 0.424
MVIS_2670
Putative exported chitinase.
   
 
 0.424
MVIS_4041
Putative lipoprotein containing Ig-like domain (group 2).
   
 
 0.424
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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