STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
desAFerrioxamine B receptor. (707 aa)    
Predicted Functional Partners:
MVIS_3353
FecR protein, Fe(2+)-dicitrate sensor.
 
 
 0.871
tonB
TonB protein.
  
 
 0.823
MVIS_2498
iron(III) ABC transporter, periplasmic iron-compound-binding protein.
 
   
 0.799
hatC
iron(III) ABC transporter, ATP-binding protein.
 
  
 0.787
tonB-2
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.745
exbB
TonB system transport protein ExbB.
 
  
 0.694
MVIS_2502
HTH-type transcriptional regulator, AraC family.
 
     0.682
MVIS_2969
Putative peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.673
hatB
iron(III) ABC transporter, membrane permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.663
MVIS_0629
ABC transporter, ATP-binding protein.
 
  
 0.659
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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