STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_2530Putative uncharacterized protein. (433 aa)    
Predicted Functional Partners:
MVIS_1742
Membrane protein.
  
     0.635
MVIS_0908
Putative exported metallo-beta-lactamase.
  
     0.632
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
   0.597
MVIS_3290
Putative uncharacterized protein.
  
     0.593
MVIS_2096
Putative lipoprotein.
  
     0.582
empA-2
Metalloprotease; Extracellular zinc metalloprotease.
  
     0.459
MVIS_3532
Exported peptidase, family M9.
  
     0.418
MVIS_0297
Glycerophosphoryl diester phosphodiesterase.
  
     0.415
empA
Metalloprotease.
  
     0.414
MVIS_3603
Acetyltransferase, GNAT family.
 
     0.410
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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