Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_2653Putative uncharacterized protein. (217 aa)    
Predicted Functional Partners:
MVIS_2654
Putative uncharacterized protein.
     0.986
MVIS_2655
Putative uncharacterized protein.
 
     0.885
lifO-3
Lipase chaperone.
  
     0.732
MVIS_2652
Putative uncharacterized protein.
       0.640
lipA-2
Lipase.
  
     0.578
MVIS_2670
Putative exported chitinase.
  
   
 0.569
lipA2
Lipase.
  
     0.561
MVIS_0685
Lipase.
  
     0.553
litR
HTH-type luminescence regulator LitR.
  
     0.535
lip-2
Lipase; High confidence in function and specificity.
  
     0.533
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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