Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
mts2-QPutative type VI secretion lysozyme-related protein VasS. (136 aa)    
Predicted Functional Partners:
mts2-N
Putative type VI secretion protein VasQ.
 
  
 0.989
mts2-R
Putative type VI secretion protein VasA.
 
  
 0.974
mts2-S
Putative type VI secretion protein.
 
  
 0.969
mts2-O
Putative type VI secretion protein VasR.
 
  
 0.949
mts2-AF
Putative type VI secretion ImpA-related protein VasJ.
 
  
 0.934
mts2-H
Putative type VI secretion protein VasF.
 
  
 0.914
mts2-AC
Putative uncharacterized protein.
 
    0.872
mts2-M
Secreted protein Hcp-2 (haemolysin co-regulated protein).
 
  
 0.872
mts2-V
VgrG preotein, VgrG-2.
 
  
 0.860
mts2-AH
Putative type VI secretion ImpA related protein.
 
  
 0.857
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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