Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
MVIS_2995ABC transporter, permease protein. (351 aa)    
Predicted Functional Partners:
MVIS_2996
ABC transporter, permease protein.
 
  
 0.968
MVIS_2994
ABC transporter, ATP-binding protein.
  
 0.952
MVIS_2997
ABC transporter, extracellular solute-binding protein.
 
  
 0.952
MVIS_3515
Transporter, inner membrane component.
  
  
 
0.906
MVIS_3516
Transporter, inner membrane component.
 
  
 0.866
MVIS_3514
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.807
MVIS_3517
Transporter, extracellular solute-binding protein.
 
  
 0.798
MVIS_2193
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.794
MVIS_2993
Nitroreductase.
       0.773
MVIS_2998
ABC transporter, permease protein.
       0.773
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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