STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_3000ABC transporter, ATP-binding protein. (409 aa)    
Predicted Functional Partners:
MVIS_3001
Putative ABC transporter, permease protein.
 0.999
MVIS_3002
Putative ABC transporter, substrate binding protein.
 
 0.999
MVIS_1715
ABC-type glycine betaine transporter, substrate binding domain.
 
 0.998
MVIS_3620
ABC-type glycine betaine transport system,substrate binding domain.
 
 0.998
sapD
Peptide transport system ATP-binding protein sapD; Belongs to the ABC transporter superfamily.
 
     
0.888
modB
Molybdate ABC transporter, permease component; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
    
 0.807
MVIS_2902
Putative ABC transporter, permease component.
 
      0.798
MVIS_4218
ABC transport protein, ATP-binding component.
 
     
0.774
MVIS_2979
Peptide ABC transporter, inner membrane component.
 
      0.607
oppC
Oligopeptide transport system permease protein C.
 
      0.535
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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