STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mts1-DPutative periplasmic solute-binding protein, VtsD. (243 aa)    
Predicted Functional Partners:
mts1-E
Putative type VI secretion protein VtsE; Contains phosphopeptide binding motif FHA.
 
     0.884
mts1-F
Putative type VI secretion lipoprotein VtsF.
 
     0.857
mts1-G
Putative type VI secretion protein VtsG.
 
     0.841
mts1-H
Putative type VI secretion protein VtsH.
 
     0.835
mts1-B
Transporter VtsB, MFS family.
 
     0.835
mts1-I
Putative type VI secretion IcmF-related protein VtsI.
 
     0.829
mts1-C
Putative periplasmic solute-binding protein, VtsC.
       0.794
mts1-A
D-alanine-D-alanine ligase VtsA; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.693
mts1-L
Putative type VI secretion protein VasJ-1.
 
     0.664
mts1-N
Putative type VI secretion protein VasQ-1.
 
     0.526
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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