Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mts1-RPutative type VI secretion protein VasA-1. (593 aa)    
Predicted Functional Partners:
mts1-P
Putative type VI secretion protein VasRB-1.
 
  
 0.979
mts1-N
Putative type VI secretion protein VasQ-1.
 
  
 0.970
mts1-O
Putative type VI secretion protein VasRA-1.
 
  
 0.968
mts1-S
Putative type VI secretion protein VasB-1.
 
  
 0.961
mts1-H
Putative type VI secretion protein VtsH.
 
  
 0.936
mts1-X
Chaperone ClpB-1; Belongs to the ClpA/ClpB family.
 
  
 0.928
mts2-N
Putative type VI secretion protein VasQ.
 
  
 0.918
mts2-O
Putative type VI secretion protein VasR.
 
  
 0.915
mts2-H
Putative type VI secretion protein VasF.
 
  
 0.910
mts1-G
Putative type VI secretion protein VtsG.
 
  
 0.902
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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