Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mts1-VVgrG preotein, VgrG-1. (668 aa)    
Predicted Functional Partners:
mts1-T
Putative uncharacterized protein.
 
     0.946
mts1-U
Putative type VI secretion protein VasV-1, PAAR domain protein.
 
   
 0.945
mts2-V
VgrG preotein, VgrG-2.
  
  
 
0.926
mts2-N
Putative type VI secretion protein VasQ.
 
  
 0.857
mts1-L
Putative type VI secretion protein VasJ-1.
 
  
 0.852
mts1-N
Putative type VI secretion protein VasQ-1.
 
  
 0.851
mts2-G
Putative type VI secretion protein; 30% identical to VSAL_I1115.
 
  
 0.846
mts1-G
Putative type VI secretion protein VtsG.
 
  
 0.846
mts2-I
Putative type VI secretion ImcF-related protein; 29% identical to VSAL_I1113.
 
  
 0.844
mts1-I
Putative type VI secretion IcmF-related protein VtsI.
 
  
 0.844
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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