Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MVIS_3136ABC transporter, permease protein. (286 aa)    
Predicted Functional Partners:
MVIS_3135
ABC transporter, ATP-binding protein.
 
 0.992
MVIS_0539
ABC transporter, ATP binding protein.
 
 0.983
MVIS_1473
Putative iron transport system, periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.980
MVIS_3137
ABC transporter, periplasmic solute binding protein; The repetitive sequence in the central part of the CDS has been checked by PCR and resequencing; Belongs to the bacterial solute-binding protein 9 family.
  
 0.980
MVIS_1474
Putative iron transport system, ATPase component.
 
 0.941
MVIS_0538
ABC transporter, periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.885
MVIS_0541
Putative exported protein.
  
  
 0.583
MVIS_3397
Membrane protein.
  
  
 0.551
MVIS_0540
ABC transporter protein, membrane component.
  
  
 
0.537
MVIS_1475
Putative iron transport system, permease component.
  
  
 
0.530
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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