STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_3159Outer membrane efflux protein. (470 aa)    
Predicted Functional Partners:
MVIS_3160
Secretion protein, HlyD family.
 
 
 0.975
MVIS_3161
Toxin ABC transporter, ATP-binding protein.
 
  
 0.962
MVIS_3158
Outer membrane protein.
 
 0.960
MVIS_3157
Putative uncharacterized protein.
 
   
 0.949
MVIS_1130
Putative secretion protein, HlyD family.
  
 0.915
rtxD
RTX toxin transporter.
 
 
 0.913
MVIS_3156
Putative membrane associated signaling protein, GGDEF family protein.
 
   
 0.908
MVIS_3162
Putative uncharacterized hemolysin-type calcium-binding protein.
 
  
 0.907
prtE
Proteases secretion protein prtE.
 
 
 0.894
MVIS_2366
Secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.833
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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