STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lifO-3Lipase chaperone. (372 aa)    
Predicted Functional Partners:
lip
Lactonizing lipase.
 
 
 0.950
MVIS_0685
Lipase.
 
 
 0.887
lipA2
Lipase.
 
 
 0.887
lipA-2
Lipase.
 
 
 0.887
lip-2
Lipase; High confidence in function and specificity.
 
 
 0.875
MVIS_2655
Putative uncharacterized protein.
  
     0.741
MVIS_2653
Putative uncharacterized protein.
  
     0.732
MVIS_2654
Putative uncharacterized protein.
  
     0.702
MVIS_1355
Putative DNA-binding protein.
 
 
 0.591
MVIS_1051
Putative exported phospholipase.
  
     0.528
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.