Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MVIS_3288HTH-type transcriptional regulator, AraC family. (233 aa)    
Predicted Functional Partners:
MVIS_1404
HTH-type transcriptional regulator, AraC family.
  
     0.748
MVIS_2502
HTH-type transcriptional regulator, AraC family.
  
     0.738
MVIS_1011
HTH-type transcriptional regulator, AraC family.
  
   0.728
MVIS_2396
HTH-type transcriptional regulator, AraC family.
  
   
 0.711
MVIS_0951
HTH-type transcriptional regulator, AraC family.
  
     0.674
MVIS_2506
HTH-type transcriptional regulator, AraC family.
  
     0.674
rpoE
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.622
flhF
Flagellar biosynthesis protein FlhF.
   
  
 0.621
cysK
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
      
 0.618
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
      
 0.618
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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