Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MVIS_3353FecR protein, Fe(2+)-dicitrate sensor. (321 aa)    
Predicted Functional Partners:
MVIS_3354
TonB-dependent receptor.
 
  
 0.925
MVIS_2992
TonB-dependent receptor.
 
 
 0.902
MVIS_1299
TonB-dependent receptor.
 
 
 0.874
desA
Ferrioxamine B receptor.
 
 
 0.871
MVIS_1576
TonB dependent receptor.
 
 
 0.846
rpoE
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.768
MVIS_0633
TonB-dependent siderophore receptor.
 
  
 0.741
MVIS_0417
Putative hemoglobin-haptoglobin-binding protein A.
 
  
 0.658
MVIS_0860
TonB-dependent receptor.
 
  
 0.656
MVIS_2094
Putative uncharacterized protein.
  
 
 0.627
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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