STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_3365Membrane protein; Belongs to the BI1 family. (220 aa)    
Predicted Functional Partners:
tusE
Sulfurtransferase tusE; Part of a sulfur-relay system.
    
 0.815
htpX
Heat shock protein HtpX, membrane associated peptidase; Belongs to the peptidase M48B family.
  
  
 0.766
smpA
Small protein A, SmpA / OmlA family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
    0.572
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
  
   
 0.545
MVIS_0120
UPF0502 protein; Belongs to the UPF0502 family.
   
    0.516
rlmI
Putative uncharacterized protein; Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA.
      0.496
MVIS_2172
Membrane protein.
   
  
 0.480
ftsH
ATP-dependent protease; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
  
 0.455
MVIS_1120
Putative methionine sulfoxide reductase.
  
   0.454
ispZ
Probable intracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
    0.445
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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