Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
MVIS_3402HTH-type transcriptional regulator, GntR family. (448 aa)    
Predicted Functional Partners:
pdxY
Pyridoxamine kinase; Belongs to the pyridoxine kinase family.
  
  
 0.681
MVIS_3401
Putative lipoprotein.
       0.601
MVIS_2341
Putative uncharacterized protein.
   
    0.517
MVIS_3400
Membrane protein.
  
    0.484
MVIS_3403
6-phosphogluconate dehydrogenase.
       0.483
MVIS_4097
Putative alanine racemase; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.451
MVIS_3404
Membrane protein.
       0.435
MVIS_3265
Phenazine biosynthesis-like protein.
 
    0.416
MVIS_2591
Putative uncharacterized protein.
 
    0.414
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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