Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sapDPeptide transport system ATP-binding protein sapD; Belongs to the ABC transporter superfamily. (337 aa)    
Predicted Functional Partners:
sapB
Peptide transport system permease protein sapB.
 
 
 0.997
MVIS_3417
Peptide transport system permease protein sapC.
  
 0.997
oppC
Oligopeptide transport system permease protein C.
 
   
 0.978
MVIS_2979
Peptide ABC transporter, inner membrane component.
 
   
 0.977
sapA
Peptide transport system extracellular solute-binding protein sapA.
 
  
 0.961
sapF
Peptide transport system ATP-binding protein sapF.
 
  
0.955
MVIS_0352
ABC transporter, ATP-binding protein.
 
    
0.909
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 
    
0.909
MVIS_1004
ABC transporter, ATP-binding protein.
 
    
0.908
fbpC
iron(III) ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.908
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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