STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_3439HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (324 aa)    
Predicted Functional Partners:
MVIS_2941
HTH-type transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.682
MVIS_0992
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.630
MVIS_0907
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.603
MVIS_2892
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.596
dsdC
HTH-type transcriptional regulator DsdC; Belongs to the LysR transcriptional regulatory family.
  
     0.584
MVIS_1555
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.579
rseB
sigma-E factor regulatory protein RseB precursor.
  
     0.558
MVIS_1094
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.549
MVIS_2358
HTH-type transciptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.541
MVIS_3440
Sensor protein, histidine kinase.
       0.535
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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