Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MVIS_3475Putative membrane associated signaling protein, GGDEF family protein. (435 aa)    
Predicted Functional Partners:
MVIS_0976
Response regulator.
    0.988
MVIS_2030
Response regulator.
  
 
 0.932
MVIS_2178
Putative regulator, GGDEF family protein.
  
 0.919
MVIS_4350
Putative regulator, GGDEF family protein.
  
 0.913
MVIS_4253
Putative membrane associated signaling protein, GGDEF family protein.
 
  
 0.907
MVIS_2842
Putative membrane associated signaling protein, GGDEF family protein.
 
  
 0.905
MVIS_3156
Putative membrane associated signaling protein, GGDEF family protein.
 
  
 0.901
MVIS_0524
Putative extracellular solute-binding protein.
      0.876
varS
Response regulator, histidine kinase VarS.
  
 0.846
MVIS_0988
Putative uncharacterized HD domain protein.
  
 0.821
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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