STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_3526D-alanyl-D-alanine carboxypeptidase. (235 aa)    
Predicted Functional Partners:
MVIS_3525
Putative uncharacterized protein.
       0.773
MVIS_3527
Membrane protein.
       0.664
deoD
Purine nucleoside phosphorylase.
  
    0.583
MVIS_3524
Pseudouridylate synthase.
 
     0.557
MVIS_0609
Membrane protein.
  
     0.490
MVIS_3550
Putative exported protein.
  
     0.479
MVIS_1841
Putative uncharacterized protein.
  
     0.428
MVIS_0087
Putative lipoprotein.
  
     0.407
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.