STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_3555Cell wall endopeptidase. (449 aa)    
Predicted Functional Partners:
amiB
N-acetylmuramoyl-L-alanine amidase.
 
   
 0.787
MVIS_0442
Peptidase, family M23.
 
   
 0.778
MVIS_4273
Membrane associated peptidase, family M23.
 
   
 0.753
mltD
Membrane-bound lytic murein transglycosylase D precursor.
 
   
 0.637
MVIS_3985
Putative exported protein.
  
  
 0.632
MVIS_4139
Penicillin binding protein.
  
   
 0.602
htpX
Heat shock protein HtpX, membrane associated peptidase; Belongs to the peptidase M48B family.
 
 
  
 0.562
lepB
Signal peptidase I (leader peptidase I); Belongs to the peptidase S26 family.
  
  
 0.556
MVIS_2467
Putative lipoprotein.
 
  
 0.547
anmK
anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
    0.500
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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