STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_3604Aminopeptidase. (625 aa)    
Predicted Functional Partners:
MVIS_2698
Putative exported serine protease.
  
 0.934
empA
Metalloprotease.
 
  
 0.708
MVIS_3603
Acetyltransferase, GNAT family.
 
     0.592
empA-2
Metalloprotease; Extracellular zinc metalloprotease.
 
  
0.559
MVIS_1795
Chitin-binding protein.
  
  
 0.454
MVIS_3406
Membrane protein.
 
     0.414
hutG
Formiminoglutamase; Belongs to the arginase family.
   
 
 0.406
hutG-2
Formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
   
 
 0.406
lipA2
Lipase.
  
     0.401
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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