Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
oppFOligopeptide transport ATP-binding protein F; Belongs to the ABC transporter superfamily. (338 aa)    
Predicted Functional Partners:
oppC
Oligopeptide transport system permease protein C.
 0.999
oppB
Oligopeptide transport system permease protein B.
 0.998
MVIS_2979
Peptide ABC transporter, inner membrane component.
 
 0.997
oppA
Oligopeptide transport system, permease protein B.
 
 
 0.993
oppD
Oligopeptide transport system permease protein D; Belongs to the ABC transporter superfamily.
 
  
 
0.981
MVIS_3417
Peptide transport system permease protein sapC.
     0.975
MVIS_2978
Peptide ABC transporter, inner membrane component.
 
 0.969
MVIS_2193
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 
0.922
sapA
Peptide transport system extracellular solute-binding protein sapA.
 
 
 0.878
sapB
Peptide transport system permease protein sapB.
  
     0.771
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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