STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
siaBN-acylneuraminate cytidylyltransferase. (229 aa)    
Predicted Functional Partners:
siaC
N-acetylneuraminic acid synthetase.
  
 0.975
MVIS_3781
UDP-N-acetylglucosamine 2-epimerase.
  
 0.974
neuB
N-acetylneuraminic acid synthase.
  
 0.954
kdsC
3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
 
   0.938
wzc
Lipopolysaccharide biosynthesis protein.
       0.531
flmD
Polysaccharide biosynthesis protein.
 
   
 0.503
MVIS_3780
Membrane protein; No significant database matches.
       0.501
MVIS_3779
Putative exopolysaccharide biosynthesis protein.
 
   
 0.461
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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