STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wzaPolysaccharide export protein. (387 aa)    
Predicted Functional Partners:
wzc
Lipopolysaccharide biosynthesis protein.
 
 
 0.989
MVIS_4257
Lipopolysaccharide biosynthesis protein.
 
 
 0.970
MVIS_2311
Putative exopolysaccharide biosynthesis protein.
 
 
 0.964
wzb
Low molecular weight protein-tyrosine-phosphatase.
  
 0.941
MVIS_1944
Lipopolysaccharide export protein.
  
  
 
0.918
MVIS_2334
Putative glycosyltransferase.
 
  
 0.779
MVIS_1942
Lipopolysaccharide biosynthesis protein.
 
 
 0.728
MVIS_2314
Putative exopolysaccharide biosynthesis glycosyltransferase.
 
  
 0.693
MVIS_2336
Chain length regulator (capsular polysaccharide biosynthesis).
 
 
 0.682
manC
Mannose-1-phosphate guanyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.660
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.