STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
huvDHeme transporter protein HuvD, ATP-binding component. (262 aa)    
Predicted Functional Partners:
huvC
Heme transporter protein HuvC, transmembrane permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.986
huvB
Heme transporter protein HuvB, putative periplasmic binding protein.
 
  
 0.953
MVIS_1505
Iron-compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.939
MVIS_1115
Iron ABC transporter, permease protein, FecCD family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.931
MVIS_2719
Putative iron ABC transporter, FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.930
fhuB
Ferrichrome transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.902
hatB
iron(III) ABC transporter, membrane permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.902
MVIS_3512
ABC transporter, Periplasmic binding protein.
 
 
 0.842
btuC
Vitamin B12 import system permease protein BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
 0.801
MVIS_1506
Iron-compound ABC transporter, periplasmic component.
 
 
 0.740
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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