STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_3900Type II/III secretion system protein. (114 aa)    
Predicted Functional Partners:
tadZ-3
Type II secretion system protein Z.
  
  
 0.909
rcpC-3
Putative Flp pilus assembly protein.
  
  
 0.897
tadA-3
Type II/IV secretion system protein, ATP binding domain.
  
  
 0.869
tadC-3
Bacterial type II secretion system protein F.
  
  
 0.859
tadB-3
Bacterial type II secretion system protein F.
  
  
 0.815
tadE-3
Membrane associated secretion system protein.
  
  
 0.802
tadD-3
Putative secretion system protein.
  
  
 0.787
MVIS_3898
Putative lipoprotein.
       0.773
rcpA
Type II/III secretion system protein; Belongs to the bacterial secretin family.
      
0.773
tadG-3
Membrane associated secretion system protein.
  
  
 0.770
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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