Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MVIS_3985Putative exported protein. (285 aa)    
Predicted Functional Partners:
MVIS_3982
Membrane protein.
 
  
 0.965
MVIS_3984
ABC transporter, ATP-binding protein.
 
  
 0.929
MVIS_3983
Permease.
 
     0.920
MVIS_0539
ABC transporter, ATP binding protein.
  
  
 0.825
rpmJ2
50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
  
 0.777
MVIS_1474
Putative iron transport system, ATPase component.
  
  
 0.754
MVIS_3135
ABC transporter, ATP-binding protein.
  
  
 0.754
rpmE2
50S ribosomal protein L31 type B.
   
  
 0.725
MVIS_3986
Putative uncharacterized protein.
       0.668
MVIS_3555
Cell wall endopeptidase.
  
  
 0.632
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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