STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtxBRTX toxin transporter. (717 aa)    
Predicted Functional Partners:
rtxD
RTX toxin transporter.
 
 0.990
MVIS_3160
Secretion protein, HlyD family.
 
 0.922
prtE
Proteases secretion protein prtE.
 
 
 0.885
rtxE
RTX toxin secretion ATP-binding protein.
 
  
 
0.862
rtxC
Cytolysin-activating lysine-acyltransferase.
 
   
 0.782
MVIS_3162
Putative uncharacterized hemolysin-type calcium-binding protein.
 
  
 0.765
viuB
Siderophore utilization protein ViuB.
   
   0.744
MVIS_3159
Outer membrane efflux protein.
 
  
 0.657
tolC
Outer membrane protein TolC precursor.
  
  
 0.656
rtxA
RTX toxin RtxA.
 
    0.625
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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