STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_4094UPF0246 protein; Belongs to the UPF0246 family. (259 aa)    
Predicted Functional Partners:
MVIS_0843
MFS transporter.
  
    0.809
MVIS_0943
MFS transporter.
  
    0.809
MVIS_1441
MFS transporter.
  
    0.809
MVIS_1109
MFS transporter.
  
    0.711
pilU
Twitching motility protein PilU, type II/IV secretion system protein.
       0.590
pilT
Twitching mobility protein PilT, type II/IV secretion system protein.
       0.584
MVIS_3515
Transporter, inner membrane component.
   
    0.505
MVIS_4097
Putative alanine racemase; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.501
MVIS_2995
ABC transporter, permease protein.
   
    0.433
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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