Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilUTwitching motility protein PilU, type II/IV secretion system protein. (371 aa)    
Predicted Functional Partners:
pilT
Twitching mobility protein PilT, type II/IV secretion system protein.
 
  
0.884
pilM
Fimbrial assembly protein PilM.
  
  
 0.868
pilD
Type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.863
pilC
Type IV pilus assembly protein PilC.
 
   
 0.826
mshG
Type IV pilus, mannose-sensitive hemagglutinin protein.
 
   
 0.825
epsF
General secretion pathway protein F.
 
   
 0.806
pilQ
Fimbrial assembly protein PilQ precursor.
  
  
 0.777
pilO
Fimbrial assembly protein PilO.
 
  
 0.749
pilN
Fimbrial assembly protein PilN.
  
  
 0.716
MVIS_0478
Putative type IV assembly protein.
  
   
 0.703
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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