Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilNFimbrial assembly protein PilN. (186 aa)    
Predicted Functional Partners:
pilM
Fimbrial assembly protein PilM.
 
 
 0.999
pilO
Fimbrial assembly protein PilO.
 
 
 0.998
pilQ
Fimbrial assembly protein PilQ precursor.
 
 
 0.997
pilP
Fimbrial assembly protein PilP.
 
  
 0.995
MVIS_4336
Putative cell wall degradation enzyme.
  
 
   0.926
mshI1
Type IV pilus, mannose-sensitive hemagglutinin D (MSHI).
  
 
 0.884
MVIS_0478
Putative type IV assembly protein.
 
  
 0.864
MVIS_0667
Putative type 4 fimbrial biogenesis protein PilF.
  
   
 0.836
MVIS_0477
Putative type IV assembly protein.
 
  
 0.806
MVIS_1389
Putative uncharacterized protein.
 
  
 0.747
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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