Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MVIS_4153HTH-type transcriptional regulator, AraC family. (304 aa)    
Predicted Functional Partners:
MVIS_2955
HTH-type transcriptional activator, AraC family.
  
     0.759
MVIS_1011
HTH-type transcriptional regulator, AraC family.
  
   0.728
MVIS_2502
HTH-type transcriptional regulator, AraC family.
  
     0.711
MVIS_2731
HTH-type transcriptional regulator, AraC family.
  
     0.669
MVIS_4155
Membrane protein.
 
     0.631
MVIS_2396
HTH-type transcriptional regulator, AraC family.
  
   
 0.565
MVIS_4154
Putative uncharacterized protein.
   
   0.536
MVIS_3485
Transcriptional regulator, AraC family.
  
     0.441
rpoA
DNA-directed RNA polymerase alpha-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.401
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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