Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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pilDType IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (295 aa)    
Predicted Functional Partners:
pilC
Type IV pilus assembly protein PilC.
 
  
 0.962
pilB
Type IV pilus assembly protein PilB.
 
 
 0.937
epsF
General secretion pathway protein F.
 
  
 0.926
mshG
Type IV pilus, mannose-sensitive hemagglutinin protein.
 
  
 0.925
coaE
dephospho-CoA kinase (dephosphocoenzyme a kinase); Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.904
epsE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.903
mshE
Type IV pilus, mannose-sensitive hemagglutinin E (MSHE).
 
 
 0.903
pilT
Twitching mobility protein PilT, type II/IV secretion system protein.
 
   
 0.886
smf
Smf protein.
  
  
 0.866
pilU
Twitching motility protein PilU, type II/IV secretion system protein.
  
   
 0.863
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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