STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshCType IV pilus, prepilin-like protein (MSHC). (169 aa)    
Predicted Functional Partners:
mshO
Exported protein MshO.
       0.773
mshD
Type IV pilus, prepilin-like protein (MSHD).
       0.773
mshP
Exported protein MshP.
       0.673
mshQ
Membrane protein MshQ.
       0.668
epsE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
   0.574
pilB
Type IV pilus assembly protein PilB.
  
   0.574
mshE
Type IV pilus, mannose-sensitive hemagglutinin E (MSHE).
  
   0.574
epsF
General secretion pathway protein F.
  
    0.567
pilC
Type IV pilus assembly protein PilC.
  
    0.567
mshG
Type IV pilus, mannose-sensitive hemagglutinin protein.
  
    0.567
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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