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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshA5Type IV pilus, mannose-sensitive hemagglutinin A. (153 aa)    
Predicted Functional Partners:
mshD
Type IV pilus, prepilin-like protein (MSHD).
 
   
 0.822
mshO
Exported protein MshO.
 
   
 0.812
mshQ
Membrane protein MshQ.
 
     0.811
mshP
Exported protein MshP.
 
     0.801
mshG
Type IV pilus, mannose-sensitive hemagglutinin protein.
 
  
 0.801
mshD-2
Type IV pilus, mannose-sensitive hemagglutinin D (MSHD).
 
  
 0.781
mshJ
Type IV pilus, mannose-sensitive hemagglutinin D (MSHJ).
 
   
 0.779
mshI1
Type IV pilus, mannose-sensitive hemagglutinin D (MSHI).
 
   
 0.775
MVIS_4246
Type IV pilus, mannose-sensitive hemagglutinin D (MSHN).
 
     0.737
mshE
Type IV pilus, mannose-sensitive hemagglutinin E (MSHE).
 
 
 0.708
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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