STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshA1Type IV pilus, mannose-sensitive hemagglutinin A. (155 aa)    
Predicted Functional Partners:
mshG
Type IV pilus, mannose-sensitive hemagglutinin protein.
 
    0.886
mshD-2
Type IV pilus, mannose-sensitive hemagglutinin D (MSHD).
 
  
 0.855
mshJ
Type IV pilus, mannose-sensitive hemagglutinin D (MSHJ).
 
   
 0.850
mshI1
Type IV pilus, mannose-sensitive hemagglutinin D (MSHI).
 
    0.840
MVIS_4246
Type IV pilus, mannose-sensitive hemagglutinin D (MSHN).
 
     0.812
mshE
Type IV pilus, mannose-sensitive hemagglutinin E (MSHE).
 
   0.801
mshD
Type IV pilus, prepilin-like protein (MSHD).
 
   
 0.780
mshQ
Membrane protein MshQ.
 
     0.761
mshO
Exported protein MshO.
 
     0.752
mshP
Exported protein MshP.
 
     0.741
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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