STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_4253Putative membrane associated signaling protein, GGDEF family protein. (638 aa)    
Predicted Functional Partners:
varS
Response regulator, histidine kinase VarS.
 
  
 0.941
arcB-2
Response regulator, aerobic respiration control sensor protein ArcB.
  
 
 0.939
MVIS_3506
Putative membrane associated signaling protein, GGDEF family protein.
 
 
 0.919
MVIS_1895
Putative regulator, GGDEF family protein.
 
 
 0.916
MVIS_4350
Putative regulator, GGDEF family protein.
 
  
 0.908
MVIS_3475
Putative membrane associated signaling protein, GGDEF family protein.
 
  
 0.907
MVIS_2030
Response regulator.
  
 
 0.906
MVIS_0909
Putative membrane associated signaling protein, GGDEF family protein.
 
 
0.877
MVIS_1010
Putative membrane associated signaling protein, GGDEF family protein.
 
 
0.836
MVIS_2114
Putative membrane associated signaling protein, GGDEF family protein.
 
 
0.836
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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