Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MVIS_4388Putative AMP-binding acetyl-CoA synthetase. (553 aa)    
Predicted Functional Partners:
MVIS_0560
Putative AMP-binding enzyme.
  
  
 
0.699
MVIS_3812
Long-chain acyl-CoA synthetase.
  
  
 
0.692
MVIS_1464
long-chain-fatty-acid--CoA ligase.
 
 
0.686
fadD
acyl-CoA synthetase.
 
 
0.664
MVIS_0685
Lipase.
     
 0.605
lipA2
Lipase.
     
 0.605
lipA-2
Lipase.
     
 0.605
lip
Lactonizing lipase.
     
 0.605
lip-2
Lipase; High confidence in function and specificity.
     
 0.605
MVIS_1390
Fatty acyl-CoA reductase.
   
 0.568
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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